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Symbol
Name
ID
Scn1a
sodium channel, voltage-gated, type I, alpha
MGI:98246
Phenotype annotations related to nervous system
*Aspects of the system are reported to show a normal phenotype.
!Indicates phenotype varies with strain background.
Darker colors indicate more annotations
Human Phenotypes
Secondary microcephaly
Drooling
Photophobia
Cortical dysplasia
Cerebral atrophy
Generalized cerebral atrophy/hypoplasia
Dysgenesis of the hippocampus
Hypoplastic hippocampus
Global brain atrophy
Arachnoid cyst
Ataxia
Progressive gait ataxia
Incoordination
Poor fine motor coordination
Bradykinesia
Parkinsonism
Choreoathetosis
Chorea
Myoclonus
Tremor
Action tremor
Abnormal pyramidal sign
Hemiparesis
Hemiplegia
Interictal epileptiform activity
EEG with focal epileptiform discharges
Multifocal epileptiform discharges
EEG with generalized epileptiform discharges
EEG with spike-wave complexes
EEG with spike-wave complexes (>3.5 Hz)
Absent speech
Anxiety
Autistic behavior
Obsessive-compulsive trait
Impulsivity
Motor stereotypy
Phonophobia
Cognitive impairment
Mental deterioration
Short attention span
Intellectual disability, moderate
Intellectual disability, profound
Intellectual disability, severe
Brisk reflexes
Dystonia
Inability to walk
Hyperkinetic movements
Epileptic encephalopathy
Migraine with aura
Developmental regression
Global developmental delay
Motor delay
Seizure
Bilateral tonic-clonic seizure
Photosensitive tonic-clonic seizure
Focal impaired awareness seizure
Generalized non-motor (absence) seizure
Atypical absence seizure
Myoclonic absence seizure
Focal-onset seizure
Focal aware seizure
Focal hemiclonic seizure
Generalized-onset seizure
Generalized clonic seizure
Generalized myoclonic seizure
Photosensitive myoclonic seizure
Generalized tonic seizure
Febrile seizure (within the age range of 3 months to 6 years)
Complex febrile seizure
Atonic seizure
Epileptic spasm
Myoclonic seizure
Tonic seizure
Visually-induced seizure
Status epilepticus
Epilepsia partialis continua
Status epilepticus without prominent motor symptoms
Atypical absence status epilepticus
Disease(s) Associated with SCN1A
developmental and epileptic encephalopathy 6B
Dravet syndrome
familial hemiplegic migraine 3
generalized epilepsy with febrile seizures plus
generalized epilepsy with febrile seizures plus 2

Mouse Phenotypes
nervous system phenotype
increased susceptibility to pharmacologically induced seizures
seizures
maximal tonic hindlimb extension seizures
environmentally induced seizures
convulsive seizures
clonic seizures
tonic seizures
tonic-clonic seizures
abnormal spike wave discharge
decreased brain weight
decreased brain size
abnormal hippocampus granule cell morphology
abnormal hippocampus neuron morphology
abnormal neocortex morphology
abnormal cerebellar molecular layer
abnormal dendrite morphology
abnormal dendritic spine morphology
abnormal nervous system electrophysiology
abnormal action potential
impaired ability to fire action potentials
abnormal brain wave pattern
abnormal neuron physiology
abnormal synaptic transmission
abnormal GABA-mediated receptor currents
increased excitatory postsynaptic current frequency
abnormal inhibitory postsynaptic currents
abnormal miniature excitatory postsynaptic currents
abnormal miniature inhibitory postsynaptic currents
decreased paired-pulse ratio
Availability Mouse Genotype
Scn1aem1Anord/Scn1aem1Anord
Scn1atm1.1Aesc/Scn1atm1.1Aesc *
Scn1atm1.1Swl/Scn1atm1.1Swl
Scn1atm1Kzy/Scn1atm1Kzy
Scn1atm1Wac/Scn1atm1Wac
Scn1atm2.2Kzy/Scn1atm2.2Kzy
Scn1aem1Anord/Scn1a+
Scn1atm1.1Aesc/Scn1a+
Scn1atm1.1Kzy/Scn1a+
Scn1atm1.1Swl/Scn1a+
Scn1atm1Kea/Scn1a+ !
Scn1atm1Kzy/Scn1a+
Scn1atm1Wac/Scn1a+
Scn1atm2.2Kzy/Scn1a+
Tg(Scn1a*)RH9Aesc/0
Scn1atm2.1Kzy/Scn1atm2.1Kzy
Tg(Slc32a1-cre)65Kzy/0  (conditional)
Emx1tm1.1(cre)Ito/Emx1+
Scn1atm2.1Kzy/Scn1atm2.1Kzy  (conditional)
Emx1tm1.1(cre)Ito/Emx1+
Scn1atm2.1Kzy/Scn1atm2.1Kzy
Tg(Slc32a1-cre)65Kzy/0  (conditional)
Scn1atm2.1Kzy/Scn1atm2.1Kzy
Tg(Pvalb-cre)1Tama/0  (conditional)
Scn1atm2.1Kzy/Scn1a+
Tg(Slc32a1-cre)65Kzy/0  (conditional)
Scn1atm2.1Kzy/Scn1a+
Tg(Pvalb-cre)1Tama/0  (conditional)
Scn1atm2.1Wac/Scn1a+
Tg(I12b-cre)1Jlr/0  (conditional)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
04/23/2024
MGI 6.23
The Jackson Laboratory